EFO statistics¶
import bionty_base as bt
✅ wrote new records from public sources.yaml to /home/zeth/.lamin/bionty/versions/sources_local.yaml!
if you see this message repeatedly, run: import bionty_base; bionty_base.reset_sources()
bt.display_available_sources().loc["ExperimentalFactor"]
| source | organism | version | url | md5 | source_name | source_website | |
|---|---|---|---|---|---|---|---|
| entity | |||||||
| ExperimentalFactor | efo | all | 3.63.0 | http://www.ebi.ac.uk/efo/releases/v3.63.0/efo.owl | 603e6f6981d53d501c5921aa3940b095 | The Experimental Factor Ontology | https://bioportal.bioontology.org/ontologies/EFO |
| ExperimentalFactor | efo | all | 3.57.0 | http://www.ebi.ac.uk/efo/releases/v3.57.0/efo.owl | 2ecafc69b3aba7bdb31ad99438505c05 | The Experimental Factor Ontology | https://bioportal.bioontology.org/ontologies/EFO |
| ExperimentalFactor | efo | all | 3.48.0 | http://www.ebi.ac.uk/efo/releases/v3.48.0/efo.owl | 3367e9a9ae3dee9113024e5108c49091 | The Experimental Factor Ontology | https://bioportal.bioontology.org/ontologies/EFO |
efo_3_57 = bt.ExperimentalFactor(version="3.57.0")
efo_3_63 = bt.ExperimentalFactor(version="3.63.0")
len(set(efo_3_57.df().index.values) - set(efo_3_63.df().index.values))
0
len(set(efo_3_63.df().index.values) - set(efo_3_57.df().index.values))
529